CBN2Path
This is the released version of CBN2Path; for the devel version, see CBN2Path.
CBN2Path: an R/Bioconductor package for the analysis of cancer progression pathways using Conjunctive Bayesian Networks
Bioconductor version: Release (3.23)
CBN2Path package provides a unifying interface to facilitate CBN-based quantification, analysis and visualization of cancer progression pathways.
Author: William Choi-Kim [aut, cre], Sayed-Rzgar Hosseini [aut, cre]
Maintainer: William Choi-Kim <william at williamck.com>, Sayed-Rzgar Hosseini <razgar at gmail.com>
citation("CBN2Path")):William Choi-Kim, Sayed-Rzgar Hosseini. CBN2Path: CBN2Path: an R/Bioconductor package for the analysis of cancer progression pathways using Conjunctive Bayesian Networks. doi:10.18129/B9.bioc.CBN2Path, R package version 1.2.0, https://bioconductor.org/packages/CBN2Path.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("CBN2Path")For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("CBN2Path")| CBN2Path Vignette | HTML | R Script |
| Reference Manual | ||
| INSTALL | Text | |
| LICENSE | Text |
Details
| biocViews | Bayesian, GraphAndNetwork, Pathways, Software, StatisticalMethod |
| Version | 1.2.0 |
| In Bioconductor since | BioC 3.22 (R-4.5) (1 year) |
| License | MIT + file LICENSE |
| Depends | R (>= 4.1.0) |
| Imports | R6, ggraph, tidygraph, ggplot2, patchwork, cowplot, magrittr, igraph, rlang, grDevices, coda, graphics, stats, TCGAbiolinks, BiocParallel |
| System Requirements | GNU Scientific Library (GSL) |
| URL | https://github.com/rockwillck/CBN2Path http://dx.doi.org/10.1093/biomet/asp023 http://dx.doi.org/10.1093/bioinformatics/btp505 |
| Bug Reports | https://github.com/rockwillck/CBN2Path/issues |
See More
| Suggests | testthat (>= 3.0.0), BiocStyle, knitr, rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report, r-universe |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | CBN2Path_1.2.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (big-sur-x86_64) | CBN2Path_1.2.0.tgz |
| macOS Binary (sonoma-arm64) | CBN2Path_1.2.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/CBN2Path |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/CBN2Path |
| Package Short Url | https://bioconductor.org/packages/CBN2Path/ |
| Package Downloads Report | Download Stats |