ASSET

This is the released version of ASSET; for the devel version, see ASSET.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13

An R package for subset-based association analysis of heterogeneous traits and subtypes

Bioconductor version: Release (3.23)

An R package for subset-based analysis of heterogeneous traits and disease subtypes. The package allows the user to search through all possible subsets of z-scores to identify the subset of traits giving the best meta-analyzed z-score. Further, it returns a p-value adjusting for the multiple-testing involved in the search. It also allows for searching for the best combination of disease subtypes associated with each variant.

Author: Samsiddhi Bhattacharjee [aut, cre], Guanghao Qi [aut], Nilanjan Chatterjee [aut], William Wheeler [aut]

Maintainer: Samsiddhi Bhattacharjee <sb1 at nibmg.ac.in>

Citation (from within R, enter citation("ASSET")):

Samsiddhi Bhattacharjee, Guanghao Qi, Nilanjan Chatterjee, William Wheeler. ASSET: An R package for subset-based association analysis of heterogeneous traits and subtypes. doi:10.18129/B9.bioc.ASSET, R package version 2.30.0, https://bioconductor.org/packages/ASSET.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ASSET")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ASSET")

ASSET Vignette	PDF	R Script
Reference Manual	PDF
NEWS	Text
LICENSE	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	GenomeWideAssociation, MultipleComparison, SNP, Software, StatisticalMethod
Version	2.30.0
In Bioconductor since	BioC 2.13 (R-3.0) (13 years)
License	GPL-2 + file LICENSE
Depends	R (>= 3.5.0), stats, graphics
Imports	MASS, msm, rmeta
System Requirements
URL

Suggests	RUnit, BiocGenerics, knitr
Linking To
Enhances
Depends On Me	REBET
Imports Me
Suggests Me
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	ASSET_2.30.0.tar.gz
Windows Binary (x86_64)	ASSET_2.30.0.zip
macOS Binary (big-sur-x86_64)	ASSET_2.30.0.tgz
macOS Binary (sonoma-arm64)	ASSET_2.30.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/ASSET
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/ASSET
Package Short Url	https://bioconductor.org/packages/ASSET/
Package Downloads Report	Download Stats