ASAFE
Ancestry Specific Allele Frequency Estimation
Bioconductor version: 3.23 · Package version: 1.38.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
Given admixed individuals' bi-allelic SNP genotypes and ancestry pairs (where each ancestry can take one of three values) for multiple SNPs, perform an EM algorithm to deal with the fact that SNP genotypes are unphased with respect to ancestry pairs, in order to estimate ancestry-specific allele frequencies for all SNPs.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ASAFE")Details
| Maintainer | Qian Zhang <qszhang@uw.edu> |
| Author | Qian Zhang <qszhang@uw.edu> |
| License | Artistic-2.0 |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | BiomedicalInformatics, ExperimentalDesign, Genetics, GenomeWideAssociation, LinkageDisequilibrium, SNP, Software |
| Package Short Url | https://bioconductor.org/packages/ASAFE/ |
Citation
From within R, enter citation("ASAFE"):
Qian Zhang. ASAFE: Ancestry Specific Allele Frequency Estimation. doi:10.18129/B9.bioc.ASAFE, R package version 1.38.0, https://bioconductor.org/packages/ASAFE.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | ASAFE_1.38.0.tar.gz |
| Windows binary (x86_64) | ASAFE_1.38.0.zip |
| macOS binary (arm64) | ASAFE_1.38.0.tgz |
| macOS binary (x86_64) | ASAFE_1.38.0.tgz |