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AMOUNTAIN

This is the released version of AMOUNTAIN; for the devel version, see AMOUNTAIN.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4

Active modules for multilayer weighted gene co-expression networks: a continuous optimization approach

DOI: 10.18129/B9.bioc.AMOUNTAIN

Bioconductor version: Release (3.23)

A pure data-driven gene network, weighted gene co-expression network (WGCN) could be constructed only from expression profile. Different layers in such networks may represent different time points, multiple conditions or various species. AMOUNTAIN aims to search active modules in multi-layer WGCN using a continuous optimization approach.

Author: Dong Li, Shan He, Zhisong Pan and Guyu Hu

Maintainer: Dong Li <dxl466 at cs.bham.ac.uk>

Citation (from within R, enter citation("AMOUNTAIN")):

Dong Li, Shan He, Zhisong Pan and Guyu Hu. AMOUNTAIN: Active modules for multilayer weighted gene co-expression networks: a continuous optimization approach. doi:10.18129/B9.bioc.AMOUNTAIN, R package version 1.38.0, https://bioconductor.org/packages/AMOUNTAIN.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("AMOUNTAIN")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("AMOUNTAIN")

Details

Package Archives

Follow Installation instructions to use this package in your R session.