ABSSeq
ABSSeq: a new RNA-Seq analysis method based on modelling absolute expression differences
Bioconductor version: Release (3.19)
Inferring differential expression genes by absolute counts difference between two groups, utilizing Negative binomial distribution and moderating fold-change according to heterogeneity of dispersion across expression level.
Author: Wentao Yang
Maintainer: Wentao Yang <wyang at zoologie.uni-kiel.de>
Citation (from within R, enter
citation("ABSSeq")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ABSSeq")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ABSSeq")
ABSSeq | R Script | |
Reference Manual | ||
NEWS | Text |
Details
biocViews | DifferentialExpression, Software |
Version | 1.58.0 |
In Bioconductor since | BioC 2.14 (R-3.1) (10.5 years) |
License | GPL (>= 3) |
Depends | R (>= 2.10), methods |
Imports | locfit, limma |
System Requirements | |
URL |
See More
Suggests | edgeR |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | metaseqR2 |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | ABSSeq_1.58.0.tar.gz |
Windows Binary | ABSSeq_1.58.0.zip |
macOS Binary (x86_64) | ABSSeq_1.58.0.tgz |
macOS Binary (arm64) | ABSSeq_1.58.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/ABSSeq |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/ABSSeq |
Bioc Package Browser | https://code.bioconductor.org/browse/ABSSeq/ |
Package Short Url | https://bioconductor.org/packages/ABSSeq/ |
Package Downloads Report | Download Stats |