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recount3

This is the released version of recount3; for the devel version, see recount3.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12

Explore and download data from the recount3 project

DOI: 10.18129/B9.bioc.recount3

Bioconductor version: Release (3.23)

The recount3 package enables access to a large amount of uniformly processed RNA-seq data from human and mouse. You can download RangedSummarizedExperiment objects at the gene, exon or exon-exon junctions level with sample metadata and QC statistics. In addition we provide access to sample coverage BigWig files.

Author: Leonardo Collado-Torres [aut, cre] ORCID: 0000-0003-2140-308X

Maintainer: Leonardo Collado-Torres <lcolladotor at gmail.com>

Citation (from within R, enter citation("recount3")):

Leonardo Collado-Torres. recount3: Explore and download data from the recount3 project. doi:10.18129/B9.bioc.recount3, R package version 1.22.0, https://bioconductor.org/packages/recount3.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("recount3")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("recount3")

Details

Package Archives

Follow Installation instructions to use this package in your R session.