qPLEXanalyzer

This is the released version of qPLEXanalyzer; for the devel version, see qPLEXanalyzer.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8

Tools for quantitative proteomics data analysis

Bioconductor version: Release (3.23)

Tools for TMT based quantitative proteomics data analysis.

Author: Matthew Eldridge [aut], Kamal Kishore [aut], Ashley Sawle [aut, cre]

Maintainer: Ashley Sawle <ads2202cu at gmail.com>

Citation (from within R, enter citation("qPLEXanalyzer")):

Matthew Eldridge, Kamal Kishore, Ashley Sawle. qPLEXanalyzer: Tools for quantitative proteomics data analysis. doi:10.18129/B9.bioc.qPLEXanalyzer, R package version 1.30.0, https://bioconductor.org/packages/qPLEXanalyzer.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("qPLEXanalyzer")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("qPLEXanalyzer")

qPLEXanalyzer	HTML	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	DataImport, ImmunoOncology, MassSpectrometry, Normalization, Preprocessing, Proteomics, QualityControl, Software
Version	1.30.0
In Bioconductor since	BioC 3.8 (R-3.5) (8 years)
License	GPL-2
Depends	R (>= 4.0), Biobase, MSnbase
Imports	assertthat, BiocGenerics, Biostrings, dplyr (>= 1.0.0), ggdendro, ggplot2, graphics, grDevices, IRanges, limma, magrittr, MSnbase, preprocessCore, purrr, RColorBrewer, readr, rlang, scales, stats, stringr, tibble, tidyr, tidyselect, utils
System Requirements
URL
Bug Reports	https://github.com/crukci-bioinformatics/qPLEXanalyzer/issues

Suggests	patchwork, knitr, MSnbase, qPLEXdata, rmarkdown, statmod, testthat, UniProt.ws, vdiffr
Linking To
Enhances
Depends On Me	qPLEXdata
Imports Me
Suggests Me
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	qPLEXanalyzer_1.30.0.tar.gz
Windows Binary (x86_64)	qPLEXanalyzer_1.30.0.zip
macOS Binary (big-sur-x86_64)	qPLEXanalyzer_1.30.0.tgz
macOS Binary (sonoma-arm64)	qPLEXanalyzer_1.30.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/qPLEXanalyzer
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/qPLEXanalyzer
Package Short Url	https://bioconductor.org/packages/qPLEXanalyzer/
Package Downloads Report	Download Stats