omicsPrint

This is the released version of omicsPrint; for the devel version, see omicsPrint.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7

Cross omic genetic fingerprinting

Bioconductor version: Release (3.23)

omicsPrint provides functionality for cross omic genetic fingerprinting, for example, to verify sample relationships between multiple omics data types, i.e. genomic, transcriptomic and epigenetic (DNA methylation).

Author: Maarten van Iterson [aut], Davy Cats [cre]

Maintainer: Davy Cats <davycats.dc at gmail.com>

Citation (from within R, enter citation("omicsPrint")):

Maarten van Iterson. omicsPrint: Cross omic genetic fingerprinting. doi:10.18129/B9.bioc.omicsPrint, R package version 1.32.0, https://bioconductor.org/packages/omicsPrint.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("omicsPrint")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("omicsPrint")

omicsPrint: detection of data linkage errors in multiple omics studies	HTML	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	DNAMethylation, Epigenetics, GeneticVariability, Genetics, ImmunoOncology, QualityControl, Software, Transcription, Transcriptomics
Version	1.32.0
In Bioconductor since	BioC 3.7 (R-3.5) (8.5 years)
License	GPL (>= 2)
Depends	R (>= 3.5), MASS
Imports	methods, matrixStats, graphics, stats, SummarizedExperiment, MultiAssayExperiment, RaggedExperiment
System Requirements
URL

Suggests	BiocStyle, knitr, rmarkdown, testthat, GEOquery, VariantAnnotation, Rsamtools, BiocParallel, GenomicRanges, FDb.InfiniumMethylation.hg19, snpStats
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	omicsPrint_1.32.0.tar.gz
Windows Binary (x86_64)	omicsPrint_1.32.0.zip
macOS Binary (big-sur-x86_64)	omicsPrint_1.32.0.tgz
macOS Binary (sonoma-arm64)	omicsPrint_1.32.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/omicsPrint
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/omicsPrint
Package Short Url	https://bioconductor.org/packages/omicsPrint/
Package Downloads Report	Download Stats