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netresponse

This is the released version of netresponse; for the devel version, see netresponse.

All Bioconductor versions of netresponse

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13, 2.12, 2.11, 2.10, 2.9, 2.8, 2.7

Functional Network Analysis

Bioconductor version: 3.23 · Package version: 1.72.0

Algorithms for functional network analysis. Includes an implementation of a variational Dirichlet process Gaussian mixture model for nonparametric mixture modeling.

Author: Leo Lahti, Olli-Pekka Huovilainen, Antonio Gusmao and Juuso Parkkinen

Maintainer: Leo Lahti <leo.lahti at iki.fi>

DOI: 10.18129/B9.bioc.netresponse

Citation

From within R, enter citation("netresponse"):

Leo Lahti, Olli-Pekka Huovilainen, Antonio Gusmao and Juuso Parkkinen. netresponse: Functional Network Analysis. doi:10.18129/B9.bioc.netresponse, R package version 1.72.0, https://bioconductor.org/packages/netresponse.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("netresponse")

For older versions of R, please refer to the appropriate Bioconductor release.

Details

Version1.72.0
LicenseGPL (>=2)
URLhttps://github.com/antagomir/netresponse
Bug Reportshttps://github.com/antagomir/netresponse/issues
Last updated2026-04-28
In Bioconductor sinceBioC 2.7 (R-2.12) (15 years)
Downloads rank822 of 2,418
Source branchRELEASE_3_23
Build report Bioconductor build system, r-universe
biocViewsCellBiology, Clustering, DifferentialExpression, GeneExpression, Genetics, GraphAndNetwork, Microarray, Network, NetworkInference, Software, Transcription
Package Short Url https://bioconductor.org/packages/netresponse/

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("netresponse")
Introduction to the netresponse R package HTML R Script
Reference ManualPDF
NEWSText

Download

Follow the installation instructions to use this package in your R session.

Source packagenetresponse_1.72.0.tar.gz
Windows binary (x86_64)netresponse_1.72.0.zip
macOS binary (arm64)netresponse_1.72.0.tgz
macOS binary (x86_64)netresponse_1.72.0.tgz
Source Repositorygit clone https://git.bioconductor.org/packages/netresponse
Source Repository (Developer Access)git clone git@git.bioconductor.org:packages/netresponse
Package Downloads ReportDownload Stats
Dependencies

Depends: R (>= 2.15.1), BiocStyle, Rgraphviz, rmarkdown, methods, minet, mclust, reshape2

Imports: ggplot2, graph, igraph, parallel, plyr, qvalue, RColorBrewer

Suggests: knitr