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mirTarRnaSeq

This is the released version of mirTarRnaSeq; for the devel version, see mirTarRnaSeq.

All Bioconductor versions of mirTarRnaSeq

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13

mirTarRnaSeq

Bioconductor version: 3.23 · Package version: 1.20.0

mirTarRnaSeq R package can be used for interactive mRNA miRNA sequencing statistical analysis. This package utilizes expression or differential expression mRNA and miRNA sequencing results and performs interactive correlation and various GLMs (Regular GLM, Multivariate GLM, and Interaction GLMs ) analysis between mRNA and miRNA expriments. These experiments can be time point experiments, and or condition expriments.

Author: Mercedeh Movassagh [aut, cre] ORCID iD ORCID: 0000-0001-7690-0230 , Sarah Morton [aut], Rafael Irizarry [aut], Jeffrey Bailey [aut], Joseph N Paulson [aut]

Maintainer: Mercedeh Movassagh <mercedeh at ds.dfci.harvard.edu>

DOI: 10.18129/B9.bioc.mirTarRnaSeq

Citation

From within R, enter citation("mirTarRnaSeq"):

Mercedeh Movassagh, Sarah Morton, Rafael Irizarry, Jeffrey Bailey, Joseph N Paulson. mirTarRnaSeq: mirTarRnaSeq. doi:10.18129/B9.bioc.mirTarRnaSeq, R package version 1.20.0, https://bioconductor.org/packages/mirTarRnaSeq.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("mirTarRnaSeq")

For older versions of R, please refer to the appropriate Bioconductor release.

Details

Version1.20.0
LicenseMIT + file LICENSE
Last updated2026-04-28
In Bioconductor sinceBioC 3.13 (R-4.1) (5 years)
Downloads rank1320 of 2,418
Source branchRELEASE_3_23
Build report Bioconductor build system, r-universe
biocViewsDifferentialExpression, Regression, Sequencing, SmallRNA, Software, TimeCourse, miRNA
Package Short Url https://bioconductor.org/packages/mirTarRnaSeq/

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("mirTarRnaSeq")
mirTarRnaSeq HTML R Script
Reference ManualPDF
NEWSText

Download

Follow the installation instructions to use this package in your R session.

Source packagemirTarRnaSeq_1.20.0.tar.gz
Windows binary (x86_64)mirTarRnaSeq_1.20.0.zip
macOS binary (arm64)mirTarRnaSeq_1.20.0.tgz
macOS binary (x86_64)mirTarRnaSeq_1.20.0.tgz
Source Repositorygit clone https://git.bioconductor.org/packages/mirTarRnaSeq
Source Repository (Developer Access)git clone git@git.bioconductor.org:packages/mirTarRnaSeq
Package Downloads ReportDownload Stats
Dependencies

Depends: R (>= 4.1.0), ggplot2

Imports: purrr, MASS, pscl, assertthat, caTools, dplyr, pheatmap, reshape2, corrplot, grDevices, graphics, stats, utils, data.table, R.utils, viridis

Suggests: BiocStyle, knitr, rmarkdown, R.cache, SPONGE