maSigPro
This is the released version of maSigPro; for the devel version, see maSigPro.
Significant Gene Expression Profile Differences in Time Course Gene Expression Data
Bioconductor version: Release (3.23)
maSigPro is a regression based approach to find genes for which there are significant gene expression profile differences between experimental groups in time course microarray and RNA-Seq experiments.
Author: Ana Conesa and Maria Jose Nueda
Maintainer: Maria Jose Nueda <mj.nueda at ua.es>
citation("maSigPro")):
Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M (2015). "Orchestrating high-throughput genomic analysis with Bioconductor." Nature Methods, 12(2), 115–121. doi:10.1038/nmeth.3252.
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JYH, Zhang J (2004). "Bioconductor: open software development for computational biology and bioinformatics." Genome Biology, 5(10), R80. doi:10.1186/gb-2004-5-10-r80.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("maSigPro")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("maSigPro")| maSigPro Vignette | |
| maSigProUsersGuide.pdf | |
| Reference Manual |
Details
| biocViews | Differential Expression, Microarray, RNA-Seq, Software, TimeCourse |
| Version | 1.84.0 |
| In Bioconductor since | BioC 1.7 (R-2.2) (21 years) |
| License | GPL (>= 2) |
| Depends | R (>= 2.3.1) |
| Imports | Biobase, graphics, grDevices, venn, mclust, stats, MASS |
| System Requirements | |
| URL |
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| Linking To | |
| Enhances | |
| Depends On Me | |
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| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | maSigPro_1.84.0.tar.gz |
| Windows Binary (x86_64) | maSigPro_1.84.0.zip (64-bit only) |
| macOS Binary (big-sur-x86_64) | maSigPro_1.84.0.tgz |
| macOS Binary (sonoma-arm64) | maSigPro_1.84.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/maSigPro |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/maSigPro |
| Bioc Package Browser | https://code.bioconductor.org/browse/maSigPro/ |
| Package Short Url | https://bioconductor.org/packages/maSigPro/ |
| Package Downloads Report | Download Stats |