kidpack

This is the released version of kidpack; for the devel version, see kidpack.

DKFZ kidney package

Bioconductor version: Release (3.23)

kidney microarray data

Author: Wolfgang Huber <huber at ebi.ac.uk>

Maintainer: Wolfgang Huber <huber at ebi.ac.uk>

Citation (from within R, enter citation("kidpack")):

Seminal Bioconductor project articles:

Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M (2015). "Orchestrating high-throughput genomic analysis with Bioconductor." Nature Methods, 12(2), 115–121. doi:10.1038/nmeth.3252.

Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JYH, Zhang J (2004). "Bioconductor: open software development for computational biology and bioinformatics." Genome Biology, 5(10), R80. doi:10.1186/gb-2004-5-10-r80.

Installation

To install this package, start R (version "4.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("kidpack")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("kidpack")

kidpack - overview over the DKFZ kidney data package	PDF	R Script
Reference Manual	PDF
README	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	ArrayExpress, CancerData, ExperimentData, KidneyCancerData, MicroarrayData
Version	1.54.0
License	GPL-2
Depends	R (>= 2.6.0), Biobase(>= 2.5.5)
Imports
System Requirements
URL	http://www.dkfz.de/mga

Suggests
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	kidpack_1.54.0.tar.gz
Windows Binary (x86_64)
macOS Binary (big-sur-x86_64)
macOS Binary (sonoma-arm64)
Source Repository	git clone https://git.bioconductor.org/packages/kidpack
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/kidpack
Package Short Url	https://bioconductor.org/packages/kidpack/
Package Downloads Report	Download Stats