iSEEindex
This is the released version of iSEEindex; for the devel version, see iSEEindex.
iSEE extension for a landing page to a custom collection of data sets
Bioconductor version: Release (3.23)
This package provides an interface to any collection of data sets within a single iSEE web-application. The main functionality of this package is to define a custom landing page allowing app maintainers to list a custom collection of data sets that users can selected from and directly load objects into an iSEE web-application.
Author: Kevin Rue-Albrecht [aut, cre]
, Thomas Sandmann [ctb]
, Federico Marini [aut]
, Denali Therapeutics [fnd]
Maintainer: Kevin Rue-Albrecht <kevinrue67 at gmail.com>
citation("iSEEindex")):
Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M (2015). "Orchestrating high-throughput genomic analysis with Bioconductor." Nature Methods, 12(2), 115–121. doi:10.1038/nmeth.3252.
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JYH, Zhang J (2004). "Bioconductor: open software development for computational biology and bioinformatics." Genome Biology, 5(10), R80. doi:10.1186/gb-2004-5-10-r80.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("iSEEindex")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("iSEEindex")| Adding custom header and footer to the landing page | HTML | R Script |
| Implementing custom iSEEindex resources | HTML | R Script |
| Introduction to iSEEindex | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Infrastructure, Software |
| Version | 1.10.0 |
| In Bioconductor since | BioC 3.18 (R-4.3) (3 years) |
| License | Artistic-2.0 |
| Depends | SummarizedExperiment, SingleCellExperiment |
| Imports | BiocFileCache, DT, iSEE, methods, paws.storage, rintrojs, shiny, shinydashboard, shinyjs, stringr, urltools, utils |
| System Requirements | |
| URL | https://github.com/iSEE/iSEEindex |
| Bug Reports | https://support.bioconductor.org/t/iSEEindex |
See More
| Suggests | BiocStyle, covr, knitr, RefManageR, rmarkdown, markdown, scRNAseq, sessioninfo, testthat (>= 3.0.0), yaml |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | iSEEindex_1.10.0.tar.gz |
| Windows Binary (x86_64) | iSEEindex_1.10.0.zip |
| macOS Binary (big-sur-x86_64) | iSEEindex_1.10.0.tgz |
| macOS Binary (sonoma-arm64) | iSEEindex_1.10.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/iSEEindex |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/iSEEindex |
| Bioc Package Browser | https://code.bioconductor.org/browse/iSEEindex/ |
| Package Short Url | https://bioconductor.org/packages/iSEEindex/ |
| Package Downloads Report | Download Stats |