hpar
This is the released version of hpar; for the devel version, see hpar.
Human Protein Atlas in R
Bioconductor version: Release (3.23)
The hpar package provides a simple R interface to and data from the Human Protein Atlas project.
Author: Laurent Gatto [cre, aut]
, Manon Martin [aut]
Maintainer: Laurent Gatto <laurent.gatto at uclouvain.be>
citation("hpar")):
Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M (2015). "Orchestrating high-throughput genomic analysis with Bioconductor." Nature Methods, 12(2), 115–121. doi:10.1038/nmeth.3252.
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JYH, Zhang J (2004). "Bioconductor: open software development for computational biology and bioinformatics." Genome Biology, 5(10), R80. doi:10.1186/gb-2004-5-10-r80.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("hpar")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("hpar")| Human Protein Atlas in R | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | CellBiology, DataImport, ExperimentHubSoftware, FunctionalGenomics, Proteomics, Software, SystemsBiology |
| Version | 1.54.0 |
| In Bioconductor since | BioC 2.11 (R-2.15) (14 years) |
| License | Artistic-2.0 |
| Depends | R (>= 3.5.0) |
| Imports | utils, ExperimentHub |
| System Requirements | |
| URL |
See More
| Suggests | org.Hs.eg.db, GO.db, AnnotationDbi, knitr, BiocStyle, testthat, rmarkdown, dplyr, DT |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | MetaboSignal |
| Suggests Me | pRoloc, RforProteomics |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | hpar_1.54.0.tar.gz |
| Windows Binary (x86_64) | hpar_1.54.0.zip (64-bit only) |
| macOS Binary (big-sur-x86_64) | hpar_1.54.0.tgz |
| macOS Binary (sonoma-arm64) | hpar_1.54.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/hpar |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/hpar |
| Bioc Package Browser | https://code.bioconductor.org/browse/hpar/ |
| Package Short Url | https://bioconductor.org/packages/hpar/ |
| Package Downloads Report | Download Stats |