gDRimport

This is the released version of gDRimport; for the devel version, see gDRimport.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18

Package for handling the import of dose-response data

Bioconductor version: Release (3.23)

The package is a part of the gDR suite. It helps to prepare raw drug response data for downstream processing. It mainly contains helper functions for importing/loading/validating dose-response data provided in different file formats.

Author: Arkadiusz Gladki [aut, cre] ORCID: 0000-0002-7059-6378 , Bartosz Czech [aut] ORCID: 0000-0002-9908-3007 , Marc Hafner [aut] ORCID: 0000-0003-1337-7598 , Sergiu Mocanu [aut], Dariusz Scigocki [aut], Allison Vuong [aut], Luca Gerosa [aut] ORCID: 0000-0001-6805-9410 , Janina Smola [aut]

Maintainer: Arkadiusz Gladki <gladki.arkadiusz at gmail.com>

Citation (from within R, enter citation("gDRimport")):

Arkadiusz Gladki, Bartosz Czech, Marc Hafner, Sergiu Mocanu, Dariusz Scigocki, Allison Vuong, Luca Gerosa, Janina Smola. gDRimport: Package for handling the import of dose-response data. doi:10.18129/B9.bioc.gDRimport, R package version 1.10.0, https://bioconductor.org/packages/gDRimport.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("gDRimport")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("gDRimport")

Converting a gDR-generated MultiAssayExperiment object into a PharmacoSet	HTML	R Script
Converting PharmacoSet Drug Response Data into gDR object	HTML	R Script
gDRimport	HTML	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	DataImport, Infrastructure, Software
Version	1.10.0
In Bioconductor since	BioC 3.18 (R-4.3) (3 years)
License	Artistic-2.0
Depends	R (>= 4.2)
Imports	assertthat, BumpyMatrix, checkmate, CoreGx, PharmacoGx, data.table, futile.logger, gDRutils (>= 1.7.1), magrittr, methods, MultiAssayExperiment, readxl, rio, S4Vectors, stats, stringi, SummarizedExperiment, tibble, tools, utils, XML, yaml, openxlsx, qs2
System Requirements
URL	https://github.com/gdrplatform/gDRimport https://gdrplatform.github.io/gDRimport/
Bug Reports	https://github.com/gdrplatform/gDRimport/issues

Suggests	BiocStyle, gDRtestData (>= 1.7.1), gDRstyle (>= 1.7.1), knitr, purrr, testthat
Linking To
Enhances
Depends On Me	gDR
Imports Me
Suggests Me	gDRcore
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	gDRimport_1.10.0.tar.gz
Windows Binary (x86_64)	gDRimport_1.10.0.zip
macOS Binary (big-sur-x86_64)	gDRimport_1.10.0.tgz
macOS Binary (sonoma-arm64)	gDRimport_1.10.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/gDRimport
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/gDRimport
Package Short Url	https://bioconductor.org/packages/gDRimport/
Package Downloads Report	Download Stats