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gDNAinRNAseqData

This is the released version of gDNAinRNAseqData; for the devel version, see gDNAinRNAseqData.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17

RNA-seq data with different levels of gDNA contamination

DOI: 10.18129/B9.bioc.gDNAinRNAseqData

Bioconductor version: Release (3.23)

Provides access to BAM files generated from RNA-seq data produced with different levels of gDNA contamination. It currently allows one to download a subset of the data published by Li et al., BMC Genomics, 23:554, 2022. This subset of data is formed by BAM files with about 100,000 alignments with three different levels of gDNA contamination.

Author: Robert Castelo [aut, cre] ORCID: 0000-0003-2229-4508

Maintainer: Robert Castelo <robert.castelo at upf.edu>

Citation (from within R, enter citation("gDNAinRNAseqData")):

Robert Castelo. gDNAinRNAseqData: RNA-seq data with different levels of gDNA contamination. doi:10.18129/B9.bioc.gDNAinRNAseqData, R package version 1.12.0, https://bioconductor.org/packages/gDNAinRNAseqData.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("gDNAinRNAseqData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("gDNAinRNAseqData")

Details

Package Archives

Follow Installation instructions to use this package in your R session.