flowPloidy

This is the released version of flowPloidy; for the devel version, see flowPloidy.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4

Analyze flow cytometer data to determine sample ploidy

Bioconductor version: Release (3.23)

Determine sample ploidy via flow cytometry histogram analysis. Reads Flow Cytometry Standard (FCS) files via the flowCore bioconductor package, and provides functions for determining the DNA ploidy of samples based on internal standards.

Author: Tyler Smith <tyler at plantarum.ca>

Maintainer: Tyler Smith <tyler at plantarum.ca>

Citation (from within R, enter citation("flowPloidy")):

Tyler Smith. flowPloidy: Analyze flow cytometer data to determine sample ploidy. doi:10.18129/B9.bioc.flowPloidy, R package version 1.38.0, https://bioconductor.org/packages/flowPloidy.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("flowPloidy")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("flowPloidy")

flowPloidy: Getting Started	PDF	R Script
flowPloidy: FCM Histograms	PDF	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	FlowCytometry, GUI, Regression, Software, Visualization
Version	1.38.0
In Bioconductor since	BioC 3.4 (R-3.3) (10 years)
License	GPL-3
Depends
Imports	flowCore, car, caTools, knitr, rmarkdown, minpack.lm, shiny, methods, graphics, stats, utils
System Requirements
URL	https://github.com/plantarum/flowPloidy
Bug Reports	https://github.com/plantarum/flowPloidy/issues

Suggests	flowPloidyData, testthat
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	flowPloidy_1.38.0.tar.gz
Windows Binary (x86_64)	flowPloidy_1.38.0.zip
macOS Binary (big-sur-x86_64)	flowPloidy_1.38.0.tgz
macOS Binary (sonoma-arm64)	flowPloidy_1.38.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/flowPloidy
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/flowPloidy
Package Short Url	https://bioconductor.org/packages/flowPloidy/
Package Downloads Report	Download Stats