flowDensity
This is the released version of flowDensity; for the devel version, see flowDensity.
Sequential Flow Cytometry Data Gating
Bioconductor version: Release (3.23)
This package provides tools for automated sequential gating analogous to the manual gating strategy based on the density of the data.
Author: Mehrnoush Malek,M. Jafar Taghiyar
Maintainer: Mehrnoush Malek <mehrmalek at gmail.com>
citation("flowDensity")):
Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M (2015). "Orchestrating high-throughput genomic analysis with Bioconductor." Nature Methods, 12(2), 115–121. doi:10.1038/nmeth.3252.
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JYH, Zhang J (2004). "Bioconductor: open software development for computational biology and bioinformatics." Genome Biology, 5(10), R80. doi:10.1186/gb-2004-5-10-r80.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("flowDensity")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual | |
| README | Text |
| NEWS | Text |
Details
| biocViews | Bioinformatics, Cancer, CellBiology, Clustering, DataRepresentation, DensityGating, FlowCytData, FlowCytometry, Software, StemCell |
| Version | 1.46.0 |
| In Bioconductor since | BioC 3.0 (R-3.1) (12 years) |
| License | Artistic-2.0 |
| Depends | |
| Imports | flowCore, graphics, flowViz(>= 1.42), car, polyclip, gplots, methods, stats, grDevices |
| System Requirements | xml2, GNU make, C++11 |
| URL |
See More
| Suggests | knitr, rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | CompensAID, cyanoFilter, ddPCRclust, flowCut |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | flowDensity_1.46.0.tar.gz |
| Windows Binary (x86_64) | flowDensity_1.46.0.zip |
| macOS Binary (big-sur-x86_64) | flowDensity_1.46.0.tgz |
| macOS Binary (sonoma-arm64) | flowDensity_1.46.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/flowDensity |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/flowDensity |
| Bioc Package Browser | https://code.bioconductor.org/browse/flowDensity/ |
| Package Short Url | https://bioconductor.org/packages/flowDensity/ |
| Package Downloads Report | Download Stats |