divergence

This is the released version of divergence; for the devel version, see divergence.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9

Divergence: Functionality for assessing omics data by divergence with respect to a baseline

Bioconductor version: Release (3.23)

This package provides functionality for performing divergence analysis as presented in Dinalankara et al, "Digitizing omics profiles by divergence from a baseline", PANS 2018. This allows the user to simplify high dimensional omics data into a binary or ternary format which encapsulates how the data is divergent from a specified baseline group with the same univariate or multivariate features.

Author: Wikum Dinalankara <wdd4001 at med.cornell.edu>, Luigi Marchionni <marchion at jhu.edu>, Qian Ke <qke1 at jhu.edu>

Maintainer: Wikum Dinalankara <wdd4001 at med.cornell.edu>, Luigi Marchionni <marchion at jhu.edu>

Citation (from within R, enter citation("divergence")):

Wikum Dinalankara, Luigi Marchionni, Qian Ke. divergence: Divergence: Functionality for assessing omics data by divergence with respect to a baseline. doi:10.18129/B9.bioc.divergence, R package version 1.28.0, https://bioconductor.org/packages/divergence.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("divergence")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("divergence")

Performing Divergence Analysis	HTML	R Script
Reference Manual	PDF
LICENSE	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	Software, StatisticalMethod
Version	1.28.0
In Bioconductor since	BioC 3.9 (R-3.6) (7.5 years)
License	GPL-2
Depends	R (>= 3.6), SummarizedExperiment
Imports
System Requirements
URL

Suggests	knitr, rmarkdown
Linking To
Enhances
Depends On Me
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Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	divergence_1.28.0.tar.gz
Windows Binary (x86_64)	divergence_1.28.0.zip (64-bit only)
macOS Binary (big-sur-x86_64)	divergence_1.28.0.tgz
macOS Binary (sonoma-arm64)	divergence_1.28.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/divergence
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/divergence
Package Short Url	https://bioconductor.org/packages/divergence/
Package Downloads Report	Download Stats