savingBiocObjects
This is the development version of savingBiocObjects; to use it, please install the devel version of Bioconductor.
Saving Bioconductor Objects for Sharing
Bioconductor version: Development (3.24)
Documentation and guidance on strategies for saving and sharing Bioconductor objects, covering RDS serialization, HDF5-backed storage, the alabaster ecosystem for cross-language interoperability, exporting genomic ranges to standard formats, and preserving object metadata.
Author: Michael Love [aut, cre] 
Maintainer: Michael Love <michaelisaiahlove at gmail.com>
citation("savingBiocObjects")):Michael Love. savingBiocObjects: Saving Bioconductor Objects for Sharing. doi:10.18129/B9.bioc.savingBiocObjects, R package version 0.99.1, https://bioconductor.org/packages/savingBiocObjects.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("savingBiocObjects")For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("savingBiocObjects")| savingBiocObjects.html | HTML | R Script |
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | BasicWorkflow, Workflow |
| Version | 0.99.1 |
| In Bioconductor since | BioC 3.24 (R-4.6) |
| License | MIT + file LICENSE |
| Depends | |
| Imports | |
| System Requirements | Quarto (https://quarto.org) |
| URL | https://mikelove.github.io/savingBiocObjects https://bioconductor.org/packages/savingBiocObjects/ |
| Bug Reports | https://github.com/mikelove/savingBiocObjects/issues |
See More
| Suggests | SummarizedExperiment, SingleCellExperiment, GenomicRanges, HDF5Array, anndataR, alabaster.base, alabaster.se, rtracklayer, plyranges, jsonlite, BiocManager, knitr, quarto |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report, r-universe |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | savingBiocObjects_0.99.1.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (big-sur-x86_64) | |
| macOS Binary (sonoma-arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/savingBiocObjects |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/savingBiocObjects |
| Package Short Url | https://bioconductor.org/packages/savingBiocObjects/ |
| Package Downloads Report | Download Stats |