highthroughputassays

 

This is the development version of highthroughputassays; for the stable release version, see highthroughputassays.

Using Bioconductor with High Throughput Assays

Bioconductor version: Development (3.9)

The workflow illustrates use of the flow cytometry packages to load, transform and visualize the flow data and gate certain populations in the dataset. The workflow loads the `flowCore`, `flowStats` and `flowViz` packages and its dependencies. It loads the ITN data with 15 samples, each of which includes, in addition to FSC and SSC, 5 fluorescence channels: CD3, CD4, CD8, CD69 and HLADR.

Author: Bioconductor Package Maintainer [aut, cre]

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("highthroughputassays")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("highthroughputassays", version = "3.9")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("highthroughputassays")

 

HTML R Script Using Bioconductor with High Throughput Assays

Details

biocViews ImmunoOncologyWorkflow, ProteomicsWorkflow, Workflow
Version 1.7.1
License Artistic-2.0
Depends R (>= 3.3.0), flowCore, flowStats, flowViz
Imports
LinkingTo
Suggests knitr, rmarkdown, BiocStyle
SystemRequirements
Enhances
URL https://www.bioconductor.org/help/workflows/highthroughputassays/
Depends On Me
Imports Me
Suggests Me
Links To Me

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package highthroughputassays_1.7.1.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/highthroughputassays
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/highthroughputassays
Package Short Url http://bioconductor.org/packages/highthroughputassays/
Package Downloads Report Download Stats

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