• Home
• Bioconductor 3.24
• Experiment Packages
• tximportData (development version)

tximportData

This is the development version of tximportData; for the stable release version, see tximportData.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3

tximportData

DOI: 10.18129/B9.bioc.tximportData

Bioconductor version: Development (3.24)

This package provides the output of running various transcript abundance quantifiers on a set of 2 RNA-seq samples from the GEUVADIS project. The quantifiers were Cufflinks, RSEM, kallisto, Salmon and Sailfish. alevin example output is also included. Inferential replicate data from earlier versions is archived at <doi:10.5281/zenodo.22982575>. For details on version numbers, sample information, and details on calls, see the package vignette.

Author: Michael Love

Maintainer: Michael Love <michaelisaiahlove at gmail.com>

Citation (from within R, enter citation("tximportData")):

Michael Love. tximportData: tximportData. doi:10.18129/B9.bioc.tximportData, R package version 1.41.1, https://bioconductor.org/packages/tximportData.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("tximportData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("tximportData")

Details

Package Archives

Follow Installation instructions to use this package in your R session.