tartare
Raw ground spectra recorded on Thermo Fisher Scientific mass spectrometers
Bioconductor version: 3.24 · Package version: 1.27.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
Provides raw files recorded on different Liquid Chromatography Mass Spectrometry (LC-MS) instruments. All included MS instruments are manufactured by Thermo Fisher Scientific and belong to the Orbitrap Tribrid or Q Exactive Orbitrap family of instruments. Despite their common origin and shared hardware components, e.g., Orbitrap mass analyser, the above instruments tend to write data in different "dialects" in a shared binary file format (.raw). The intention behind tartare is to provide complex but slim real-world files that can be used to make code robust with respect to this diversity. In other words, it is intended for enhanced unit testing. The package is considered to be used with the rawrr package and the Spectra MsBackends.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("tartare")Details
| Maintainer | Christian Panse <cp@fgcz.ethz.ch> |
| Author | Christian Panse [aut, cre] (ORCID: <https://orcid.org/0000-0003-1975-3064>), Tobias Kockmann [aut] (ORCID: <https://orcid.org/0000-0002-1847-885X>) |
| License | GPL-3 |
| URL | https://github.com/cpanse/tartare |
| Bug Reports | https://github.com/cpanse/tartare/issues |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | ExperimentData, ExperimentHub, MassSpectrometryData |
| Package Short Url | https://bioconductor.org/packages/tartare/ |
Citation
From within R, enter citation("tartare"):
Christian Panse, Tobias Kockmann. tartare: Raw ground spectra recorded on Thermo Fisher Scientific mass spectrometers. doi:10.18129/B9.bioc.tartare, R package version 1.27.0, https://bioconductor.org/packages/tartare.
Generated from the package metadata; it may differ from the package's own citation.
Download
Follow the installation instructions to use this package in your R session.
| Source package | tartare_1.27.0.tar.gz |
Reverse dependencies
Suggests Me (3): MsBackendRawFileReader, rawDiag, rawrr