scanMiRData

This is the development version of scanMiRData; for the stable release version, see scanMiRData.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14

miRNA Affinity models for the scanMiR package

Bioconductor version: Development (3.24)

This package contains companion data to the scanMiR package. It contains `KdModel` (miRNA 12-mer binding affinity models) collections corresponding to all human, mouse and rat mirbase miRNAs. See the scanMiR package for details.

Author: Pierre-Luc Germain [cre, aut] ORCID: 0000-0003-3418-4218 , Michael Soutschek [aut], Fridolin Gross [aut]

Maintainer: Pierre-Luc Germain <pierre-luc.germain at hest.ethz.ch>

Citation (from within R, enter citation("scanMiRData")):

Pierre-Luc Germain, Michael Soutschek, Fridolin Gross. scanMiRData: miRNA Affinity models for the scanMiR package. doi:10.18129/B9.bioc.scanMiRData, R package version 1.19.0, https://bioconductor.org/packages/scanMiRData.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("scanMiRData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("scanMiRData")

scanMiRData	HTML	R Script
Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	ExperimentData, Homo_sapiens_Data, Mus_musculus_Data, Rattus_norvegicus_Data, miRNAData
Version	1.19.0
In Bioconductor since	BioC 3.14 (R-4.1) (5 years)
License	GPL-3
Depends	R (>= 4.0)
Imports	scanMiR, utils
System Requirements
URL

Suggests	knitr, rmarkdown, BiocStyle
Linking To
Enhances
Depends On Me
Imports Me	scanMiRApp
Suggests Me
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	scanMiRData_1.19.0.tar.gz
Windows Binary (x86_64)
macOS Binary (big-sur-x86_64)
macOS Binary (sonoma-arm64)
Source Repository	git clone https://git.bioconductor.org/packages/scanMiRData
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/scanMiRData
Package Short Url	https://bioconductor.org/packages/scanMiRData/
Package Downloads Report	Download Stats