octad.db
This is the development version of octad.db; for the stable release version, see octad.db.
Open Cancer TherApeutic Discovery (OCTAD) database
Bioconductor version: Development (3.24)
Open Cancer TherApeutic Discovery (OCTAD) package implies sRGES approach for the drug discovery. The essential idea is to identify drugs that reverse the gene expression signature of a disease by tamping down over-expressed genes and stimulating weakly expressed ones. The following package contains all required precomputed data for whole OCTAD pipeline computation.
Author: E. Chekalin [aut, cre], S. Paithankar [aut], B. Zeng [aut], B. Glicksberg [ctb], P. Newbury [ctb], J. Xing [ctb], K. Liu [ctb], A. Wen [ctb], D. Joseph [ctb], B. Chen [aut]
Maintainer: E. Chekalin <eygen.chekalin at gmail.com>
citation("octad.db")):E. Chekalin, S. Paithankar, B. Zeng, B. Chen. octad.db: Open Cancer TherApeutic Discovery (OCTAD) database. doi:10.18129/B9.bioc.octad.db, R package version 1.15.1, https://bioconductor.org/packages/octad.db.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("octad.db")For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("octad.db")| octad.db | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | CancerData, ExperimentData, ExperimentHub, ExpressionData, SequencingData |
| Version | 1.15.1 |
| In Bioconductor since | BioC 3.16 (R-4.2) (4 years) |
| License | Artistic-2.0 |
| Depends | R (>= 4.2.0), ExperimentHub |
| Imports | |
| System Requirements | |
| URL |
See More
| Suggests | knitr, rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | octad |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report, r-universe |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | octad.db_1.15.1.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (big-sur-x86_64) | |
| macOS Binary (sonoma-arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/octad.db |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/octad.db |
| Package Short Url | https://bioconductor.org/packages/octad.db/ |
| Package Downloads Report | Download Stats |