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This is the development version of oct4; for the stable release version, see oct4.

Conditional knockdown of OCT4 in mouse ESCs

Bioconductor version: Development (3.20)

This package provides the output of running Salmon on a set of 12 RNA-seq samples from King & Klose, "The pioneer factor OCT4 requires the chromatin remodeller BRG1 to support gene regulatory element function in mouse embryonic stem cells", published in eLIFE, March 2017. For details on version numbers and how the samples were processed see the package vignette.

Author: Michael Love

Maintainer: Michael Love <michaelisaiahlove at>

Citation (from within R, enter citation("oct4")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))

# The following initializes usage of Bioc devel


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

Salmon quantifications for condition OCT4 knockdown in mouse ESCs HTML R Script
Reference Manual PDF


biocViews ExperimentData, RNASeqData, SequencingData
Version 1.21.0
License GPL (>= 2)
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Source Package oct4_1.21.0.tar.gz
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