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msd16s

This is the development version of msd16s; for the stable release version, see msd16s.

All versions 3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0

Healthy and moderate to severe diarrhea 16S expression data


Bioconductor version: Development (3.24)

Gut 16S sequencing expression data from 992 healthy and moderate-to-severe diarrhetic samples used in 'Diarrhea in young children from low-income countries leads to large-scale alterations in intestinal microbiota composition'.

Author: Joseph N. Paulson, Hector Corrada Bravo, Mihai Pop

Maintainer: Joseph N. Paulson <jpaulson at umiacs.umd.edu>

Citation (from within R, enter citation("msd16s")):

Joseph N. Paulson, Hector Corrada Bravo, Mihai Pop. msd16s: Healthy and moderate to severe diarrhea 16S expression data. doi:10.18129/B9.bioc.msd16s, R package version 1.33.0, https://bioconductor.org/packages/msd16s.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("msd16s")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("msd16s")
msd16s PDF R Script
Reference ManualPDF
NEWSText

Details

biocViews ExperimentData, MicrobiomeData, SequencingData
Version1.33.0
In Bioconductor sinceBioC 3.0 (R-3.1) (12 years)
License Artistic-2.0
Depends R (>= 2.10), Biobase, metagenomeSeq
Imports
System Requirements
URLhttp://www.cbcb.umd.edu/research/projects/GEMS-pathogen-discovery
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package msd16s_1.33.0.tar.gz
Windows Binary (x86_64)
macOS Binary (big-sur-x86_64)
macOS Binary (sonoma-arm64)
Source Repositorygit clone https://git.bioconductor.org/packages/msd16s
Source Repository (Developer Access)git clone git@git.bioconductor.org:packages/msd16s
Package Short Url https://bioconductor.org/packages/msd16s/
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