mosaicsExample

This is the development version of mosaicsExample; for the stable release version, see mosaicsExample.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13, 2.12, 2.11, 2.10, 2.9, 2.8, 2.7

Example data for the mosaics package, which implements MOSAiCS and MOSAiCS-HMM, a statistical framework to analyze one-sample or two-sample ChIP-seq data for transcription factor binding and histone modification

Bioconductor version: Development (3.24)

Data for the mosaics package, consisting of (1) chromosome 22 ChIP and control sample data from a ChIP-seq experiment of STAT1 binding and H3K4me3 modification in MCF7 cell line from ENCODE database (HG19) and (2) chromosome 21 ChIP and control sample data from a ChIP-seq experiment of STAT1 binding, with mappability, GC content, and sequence ambiguity scores of human genome HG18.

Author: Dongjun Chung, Pei Fen Kuan, Rene Welch, Sunduz Keles

Maintainer: Dongjun Chung <dongjun.chung at gmail.com>

Citation (from within R, enter citation("mosaicsExample")):

Dongjun Chung, Pei Fen Kuan, Rene Welch, Sunduz Keles. mosaicsExample: Example data for the mosaics package, which implements MOSAiCS and MOSAiCS-HMM, a statistical framework to analyze one-sample or two-sample ChIP-seq data for transcription factor binding and histone modification. doi:10.18129/B9.bioc.mosaicsExample, R package version 1.51.0, https://bioconductor.org/packages/mosaicsExample.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("mosaicsExample")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

No vignettes available
Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	ChIPseqData, ExperimentData, Homo_sapiens
Version	1.51.0
In Bioconductor since	BioC 2.7 (R-2.12) (16 years)
License	GPL (>= 2)
Depends	R (>= 2.11.1)
Imports
System Requirements
URL	http://groups.google.com/group/mosaics_user_group

Suggests
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me	mosaics
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	mosaicsExample_1.51.0.tar.gz
Windows Binary (x86_64)
macOS Binary (big-sur-x86_64)
macOS Binary (sonoma-arm64)
Source Repository	git clone https://git.bioconductor.org/packages/mosaicsExample
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/mosaicsExample
Package Short Url	https://bioconductor.org/packages/mosaicsExample/
Package Downloads Report	Download Stats