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minfiDataEPIC

This is the development version of minfiDataEPIC; for the stable release version, see minfiDataEPIC.

Example data for the Illumina Methylation EPIC array


Bioconductor version: Development (3.19)

Data from 3 technical replicates of the cell line GM12878 from the EPIC methylation array.

Author: Jean-Philippe Fortin, Kasper Daniel Hansen

Maintainer: Kasper Daniel Hansen <kasperdanielhansen at gmail.com>

Citation (from within R, enter citation("minfiDataEPIC")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("minfiDataEPIC")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF
NEWS Text

Details

biocViews ExperimentData, Homo_sapiens_Data, MethylationArrayData, MicroarrayData
Version 1.29.0
License Artistic-2.0
Depends R (>= 3.5.0), minfi(>= 1.21.2), IlluminaHumanMethylationEPICmanifest, IlluminaHumanMethylationEPICanno.ilm10b2.hg19
Imports
System Requirements
URL
See More
Suggests
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me MethylAid, MethylAidData, minfi, recountmethylation, REMP
Links To Me
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package minfiDataEPIC_1.29.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/minfiDataEPIC
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/minfiDataEPIC
Package Short Url https://bioconductor.org/packages/minfiDataEPIC/
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