minfiData

This is the development version of minfiData; for the stable release version, see minfiData.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13, 2.12, 2.11, 2.10, 2.9

Example data for the Illumina Methylation 450k array

Bioconductor version: Development (3.24)

Data from 6 samples across 2 groups from 450k methylation arrays.

Author: Kasper Daniel Hansen, Martin Aryee, Winston Timp

Maintainer: Kasper Daniel Hansen <kasperdanielhansen at gmail.com>

Citation (from within R, enter citation("minfiData")):

Kasper Daniel Hansen, Martin Aryee, Winston Timp. minfiData: Example data for the Illumina Methylation 450k array. doi:10.18129/B9.bioc.minfiData, R package version 0.59.0, https://bioconductor.org/packages/minfiData.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("minfiData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

No vignettes available
Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	ExperimentData, Homo_sapiens_Data, MethylationArrayData, MicroarrayData
Version	0.59.0
In Bioconductor since	BioC 2.9 (R-2.14) (15 years)
License	Artistic-2.0
Depends	R (>= 3.5.0), minfi (>= 1.21.2), IlluminaHumanMethylation450kmanifest, IlluminaHumanMethylation450kanno.ilmn12.hg19
Imports
System Requirements
URL

Suggests
Linking To
Enhances
Depends On Me	methylationArrayAnalysis
Imports Me
Suggests Me	bigmelon, conumee, CopyNeutralIMA, dnaEPICO, ENmix, funtooNorm, Harman, mCSEA, MEAL, MethylAid, MethylAidData, minfi, missMethyl, MultiDataSet, recountmethylation, regionalpcs, shinyepico, shinyMethyl, skewr
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	minfiData_0.59.0.tar.gz
Windows Binary (x86_64)
macOS Binary (big-sur-x86_64)
macOS Binary (sonoma-arm64)
Source Repository	git clone https://git.bioconductor.org/packages/minfiData
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/minfiData
Package Short Url	https://bioconductor.org/packages/minfiData/
Package Downloads Report	Download Stats