leeBamViews
This is the development version of leeBamViews; for the stable release version, see leeBamViews.
leeBamViews -- multiple yeast RNAseq samples excerpted from Lee 2009
Bioconductor version: Development (3.20)
data from PMID 19096707; prototype for managing multiple NGS samples
Author: VJ Carey <stvjc at channing.harvard.edu>
Maintainer: VJ Carey <stvjc at channing.harvard.edu>
Citation (from within R, enter
citation("leeBamViews")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("leeBamViews")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("leeBamViews")
managing multiple NGS samples with bamViews | R Script | |
Reference Manual |
Details
biocViews | ExperimentData, RNASeqData, SNPData, Saccharomyces_cerevisiae_Data, SequencingData |
Version | 1.41.0 |
License | Artistic 2.0 |
Depends | R (>= 2.15.0), Biobase, Rsamtools(>= 0.1.50), BSgenome |
Imports | GenomicRanges, GenomicAlignments, methods, S4Vectors, parallel, IRanges |
System Requirements | |
URL |
See More
Suggests | biomaRt, org.Sc.sgd.db, edgeR |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | EDASeq |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | leeBamViews_1.41.0.tar.gz |
Windows Binary | |
macOS Binary (x86_64) | |
macOS Binary (arm64) | |
Source Repository | git clone https://git.bioconductor.org/packages/leeBamViews |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/leeBamViews |
Package Short Url | https://bioconductor.org/packages/leeBamViews/ |
Package Downloads Report | Download Stats |