leeBamViews

This is the development version of leeBamViews; for the stable release version, see leeBamViews.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13, 2.12, 2.11, 2.10, 2.9, 2.8, 2.7, 2.6

leeBamViews -- multiple yeast RNAseq samples excerpted from Lee 2009

Bioconductor version: Development (3.24)

data from PMID 19096707; prototype for managing multiple NGS samples

Author: VJ Carey <stvjc at channing.harvard.edu>

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

Citation (from within R, enter citation("leeBamViews")):

VJ Carey. leeBamViews: leeBamViews -- multiple yeast RNAseq samples excerpted from Lee 2009. doi:10.18129/B9.bioc.leeBamViews, R package version 1.49.0, https://bioconductor.org/packages/leeBamViews.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("leeBamViews")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("leeBamViews")

managing multiple NGS samples with bamViews	PDF	R Script
Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	ExperimentData, RNASeqData, SNPData, Saccharomyces_cerevisiae_Data, SequencingData
Version	1.49.0
In Bioconductor since	BioC 2.6 (R-2.11) (16.5 years)
License	Artistic 2.0
Depends	R (>= 2.15.0), Biobase, Rsamtools (>= 0.1.50), BSgenome
Imports	GenomicRanges, GenomicAlignments, methods, S4Vectors, parallel, IRanges
System Requirements
URL

Suggests	biomaRt, org.Sc.sgd.db, edgeR
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me	EDASeq
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	leeBamViews_1.49.0.tar.gz
Windows Binary (x86_64)
macOS Binary (big-sur-x86_64)
macOS Binary (sonoma-arm64)
Source Repository	git clone https://git.bioconductor.org/packages/leeBamViews
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/leeBamViews
Package Short Url	https://bioconductor.org/packages/leeBamViews/
Package Downloads Report	Download Stats