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geneLenDataBase

This is the development version of geneLenDataBase; for the stable release version, see geneLenDataBase.

All versions 3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13, 2.12, 2.11, 2.10, 2.9, 2.8, 2.7, 2.6

Lengths of mRNA transcripts for a number of genomes


Bioconductor version: Development (3.24)

Length of mRNA transcripts for a number of genomes and gene ID formats, largely based on UCSC table browser. Data objects are provided as individual pieces of information to be retrieved and loaded. A variety of different gene identifiers and genomes is supported to ensure wide applicability.

Author: Matthew Young [aut], Nadia Davidson [aut], Federico Marini [ctb, cre] ORCID iD ORCID: 0000-0003-3252-7758

Maintainer: Federico Marini <marinif at uni-mainz.de>

Citation (from within R, enter citation("geneLenDataBase")):

Matthew Young, Nadia Davidson. geneLenDataBase: Lengths of mRNA transcripts for a number of genomes. doi:10.18129/B9.bioc.geneLenDataBase, R package version 1.49.1, https://bioconductor.org/packages/geneLenDataBase.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("geneLenDataBase")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

No vignettes available
Reference ManualPDF
NEWSText

Details

biocViews ExperimentData, Genome
Version1.49.1
In Bioconductor sinceBioC 2.6 (R-2.11) (16.5 years)
License LGPL (>= 2)
Depends R (>= 3.5.0)
Imports utils, rtracklayer, GenomicFeatures, txdbmaker
System Requirements
URLhttps://github.com/federicomarini/geneLenDataBase
Bug Reportshttps://github.com/federicomarini/geneLenDataBase/issues
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package geneLenDataBase_1.49.1.tar.gz
Windows Binary (x86_64)
macOS Binary (big-sur-x86_64)
macOS Binary (sonoma-arm64)
Source Repositorygit clone https://git.bioconductor.org/packages/geneLenDataBase
Source Repository (Developer Access)git clone git@git.bioconductor.org:packages/geneLenDataBase
Package Short Url https://bioconductor.org/packages/geneLenDataBase/
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