davidTiling

This is the development version of davidTiling; for the stable release version, see davidTiling.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13, 2.12, 2.11, 2.10, 2.9, 2.8, 2.7, 2.6, 2.5

Data and analysis scripts for David, Huber et al. yeast tiling array paper

Bioconductor version: Development (3.24)

This package contains the data for the paper by L. David et al. in PNAS 2006 (PMID 16569694): 8 CEL files of Affymetrix genechips, an ExpressionSet object with the raw feature data, a probe annotation data structure for the chip and the yeast genome annotation (GFF file) that was used. In addition, some custom-written analysis functions are provided, as well as R scripts in the scripts directory.

Author: Wolfgang Huber [aut, cre]

Maintainer: Wolfgang Huber <wolfgang.huber at embl.org>

Citation (from within R, enter citation("davidTiling")):

Wolfgang Huber. davidTiling: Data and analysis scripts for David, Huber et al. yeast tiling array paper. doi:10.18129/B9.bioc.davidTiling, R package version 1.53.1, https://bioconductor.org/packages/davidTiling.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("davidTiling")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

No vignettes available
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	ExperimentData, Genome, MicroarrayData, ReproducibleResearch, Saccharomyces_cerevisiae_Data
Version	1.53.1
In Bioconductor since	BioC 2.5 (R-2.10) or earlier (> 17 years)
License	LGPL
Depends	R (>= 4.0.0), Biobase (>= 2.5.5), tilingArray, GO.db, methods
Imports
System Requirements
URL	http://www.ebi.ac.uk/huber

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Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	davidTiling_1.53.1.tar.gz
Windows Binary (x86_64)
macOS Binary (big-sur-x86_64)
macOS Binary (sonoma-arm64)
Source Repository	git clone https://git.bioconductor.org/packages/davidTiling
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/davidTiling
Package Short Url	https://bioconductor.org/packages/davidTiling/
Package Downloads Report	Download Stats