To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("curatedMetagenomicData")

In most cases, you don't need to download the package archive at all.

curatedMetagenomicData

DOI: 10.18129/B9.bioc.curatedMetagenomicData    

This is the development version of curatedMetagenomicData; for the stable release version, see curatedMetagenomicData.

Curated Metagenomic Data of the Human Microbiome

Bioconductor version: Development (3.6)

The curatedMetagenomicData package provides microbial taxonomic, functional, and gene marker abundance for samples collected from different bodysites.

Author: Lucas Schiffer <schiffer.lucas at gmail.com>, Edoardo Pasolli <edoardo.pasolli at unitn.it>, Levi Waldron <lwaldron.research at gmail.com>, Faizan Malik <faizankmalik2012 at yahoo.com>, Nicola Segata <nicola.segata at unitn.it>, Valerie Obenchain <Valerie.Obenchain at roswellpark.org>, Morgan Martin <martin.morgan at roswellpark.org>

Maintainer: Lucas Schiffer <schiffer.lucas at gmail.com>

Citation (from within R, enter citation("curatedMetagenomicData")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("curatedMetagenomicData")

Documentation

HTML R Script curatedMetagenomicData
PDF   Reference Manual
Text   NEWS

Details

biocViews ExperimentData, Homo_sapiens_Data, MicrobiomeData, ReproducibleResearch
Version 1.7.9
License Artistic-2.0
Depends R (>= 3.4.0), dplyr (>= 0.5.0), Biobase(>= 2.37.0), ExperimentHub(>= 1.3.0), AnnotationHub(>= 2.9.0)
Imports utils, tidyr, magrittr, methods, S4Vectors
LinkingTo
Suggests BiocInstaller, devtools, roxygen2, testthat, covr, knitr, rmarkdown, BiocCheck, BiocStyle, BiocParallel, readr, RISmed, ggplot2, metagenomeSeq, phyloseq, ape
SystemRequirements
Enhances
URL https://github.com/waldronlab/curatedMetagenomicData
BugReports https://github.com/waldronlab/curatedMetagenomicData/issues
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source curatedMetagenomicData_1.7.9.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/curatedMetagenomicData
Package Short Url http://bioconductor.org/packages/curatedMetagenomicData/
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