chipseqDBData

This is the development version of chipseqDBData; for the stable release version, see chipseqDBData.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9

Data for the chipseqDB Workflow

Bioconductor version: Development (3.24)

Sorted and indexed BAM files for ChIP-seq libraries, for use in the chipseqDB workflow. BAM indices are also included.

Author: Aaron Lun [aut, cre]

Maintainer: Aaron Lun <infinite.monkeys.with.keyboards at gmail.com>

Citation (from within R, enter citation("chipseqDBData")):

Aaron Lun. chipseqDBData: Data for the chipseqDB Workflow. doi:10.18129/B9.bioc.chipseqDBData, R package version 1.29.0, https://bioconductor.org/packages/chipseqDBData.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("chipseqDBData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("chipseqDBData")

File manifest and statistics	HTML	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	ChIPSeqData, ExperimentData, ExperimentHub, SequencingData
Version	1.29.0
In Bioconductor since	BioC 3.9 (R-3.6) (7.5 years)
License	CC BY 4.0
Depends
Imports	AnnotationHub, ExperimentHub, Rsamtools, S4Vectors
System Requirements
URL

Suggests	knitr, BiocStyle, rmarkdown
Linking To
Enhances
Depends On Me	csawBook
Imports Me
Suggests Me	BamScale, chipseqDB
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	chipseqDBData_1.29.0.tar.gz
Windows Binary (x86_64)
macOS Binary (big-sur-x86_64)
macOS Binary (sonoma-arm64)
Source Repository	git clone https://git.bioconductor.org/packages/chipseqDBData
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/chipseqDBData
Package Short Url	https://bioconductor.org/packages/chipseqDBData/
Package Downloads Report	Download Stats