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ccdata

This is the development version of ccdata; for the stable release version, see ccdata.

Data for Combination Connectivity Mapping (ccmap) Package


Bioconductor version: Development (3.19)

This package contains microarray gene expression data generated from the Connectivity Map build 02 and LINCS l1000. The data are used by the ccmap package to find drugs and drug combinations to mimic or reverse a gene expression signature.

Author: Alex Pickering

Maintainer: Alex Pickering <alexvpickering at gmail.com>

Citation (from within R, enter citation("ccdata")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("ccdata")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF
LICENSE Text

Details

biocViews ExperimentData, ExpressionData, MicroarrayData
Version 1.29.0
License MIT + file LICENSE
Depends R (>= 3.3)
Imports
System Requirements
URL
See More
Suggests
Linking To
Enhances
Depends On Me
Imports Me ccmap
Suggests Me retriever
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ccdata_1.29.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/ccdata
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ccdata
Package Short Url https://bioconductor.org/packages/ccdata/
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