Registration Open for Bioc2024
Early registration discount pricing ends May 31!

bodymapRat

This is the development version of bodymapRat; for the stable release version, see bodymapRat.

Experimental dataset from the rat BodyMap project


Bioconductor version: Development (3.20)

This package contains a SummarizedExperiment from the Yu et al. (2013) paper that performed the rat BodyMap across 11 organs and 4 developmental stages. Raw FASTQ files were downloaded and mapped using STAR. Data is available on ExperimentHub as a data package.

Author: Stephanie Hicks [aut, cre] , Kwame Okrah [aut]

Maintainer: Stephanie Hicks <shicks19 at jhu.edu>

Citation (from within R, enter citation("bodymapRat")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("bodymapRat")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("bodymapRat")
The bodymapRat data user's guide HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews ExperimentData, ExperimentHub, ExpressionData, RNASeqData, SequencingData
Version 1.21.0
License CC BY 4.0
Depends R (>= 3.6.0), SummarizedExperiment, ExperimentHub
Imports utils
System Requirements
URL
See More
Suggests rmarkdown, knitr, BiocStyle, testthat
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me qsmooth
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package bodymapRat_1.21.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/bodymapRat
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/bodymapRat
Package Short Url https://bioconductor.org/packages/bodymapRat/
Package Downloads Report Download Stats