• Home
• Bioconductor 3.24
• Experiment Packages
• bodymapRat (development version)

bodymapRat

This is the development version of bodymapRat; for the stable release version, see bodymapRat.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9

Experimental dataset from the rat BodyMap project

DOI: 10.18129/B9.bioc.bodymapRat

Bioconductor version: Development (3.24)

This package contains a SummarizedExperiment from the Yu et al. (2013) paper that performed the rat BodyMap across 11 organs and 4 developmental stages. Raw FASTQ files were downloaded and mapped using STAR. Data is available on ExperimentHub as a data package.

Author: Stephanie Hicks [aut, cre] ORCID: 0000-0002-7858-0231 , Kwame Okrah [aut]

Maintainer: Stephanie Hicks <shicks19 at jhu.edu>

Citation (from within R, enter citation("bodymapRat")):

Stephanie Hicks, Kwame Okrah. bodymapRat: Experimental dataset from the rat BodyMap project. doi:10.18129/B9.bioc.bodymapRat, R package version 1.29.0, https://bioconductor.org/packages/bodymapRat.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("bodymapRat")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("bodymapRat")

Details

Package Archives

Follow Installation instructions to use this package in your R session.