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TMExplorer

This is the development version of TMExplorer; for the stable release version, see TMExplorer.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12

A Collection of Tumour Microenvironment Single-cell RNA Sequencing Datasets and Corresponding Metadata

DOI: 10.18129/B9.bioc.TMExplorer

Bioconductor version: Development (3.24)

This package provides a tool to search and download a collection of tumour microenvironment single-cell RNA sequencing datasets and their metadata. TMExplorer aims to act as a single point of entry for users looking to study the tumour microenvironment at the single cell level. Users can quickly search available datasets using the metadata table and then download the ones they are interested in for analysis.

Author: Erik Christensen [aut, cre], Alaine Naidas [aut], David Chen [aut], Parisa Shooshtari [aut]

Maintainer: Erik Christensen <echris3 at uwo.ca>

Citation (from within R, enter citation("TMExplorer")):

Erik Christensen, Alaine Naidas, David Chen, Parisa Shooshtari. TMExplorer: A Collection of Tumour Microenvironment Single-cell RNA Sequencing Datasets and Corresponding Metadata. doi:10.18129/B9.bioc.TMExplorer, R package version 1.23.0, https://bioconductor.org/packages/TMExplorer.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("TMExplorer")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TMExplorer")

Details

Package Archives

Follow Installation instructions to use this package in your R session.