• Home
• Bioconductor 3.24
• Experiment Packages
• TENxXeniumData (development version)

TENxXeniumData

This is the development version of TENxXeniumData; for the stable release version, see TENxXeniumData.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19

Collection of Xenium spatial data by 10X genomics

DOI: 10.18129/B9.bioc.TENxXeniumData

Bioconductor version: Development (3.24)

Collection of Xenium spatial transcriptomics datasets provided by 10x Genomics, formatted into the Bioconductor classes, the SpatialExperiment or SpatialFeatureExperiment (SFE), to facilitate seamless integration into various applications, including examples, demonstrations, and tutorials. The constructed data objects include gene expression profiles, per-transcript location data, centroid, segmentation boundaries (e.g., cell or nucleus boundaries), and image.

Author: Matineh Rahmatbakhsh [aut, cre], Monica Ge [aut]

Maintainer: Matineh Rahmatbakhsh <matinerb.94 at gmail.com>

Citation (from within R, enter citation("TENxXeniumData")):

Matineh Rahmatbakhsh, Monica Ge. TENxXeniumData: Collection of Xenium spatial data by 10X genomics. doi:10.18129/B9.bioc.TENxXeniumData, R package version 1.9.0, https://bioconductor.org/packages/TENxXeniumData.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("TENxXeniumData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TENxXeniumData")

Details

Package Archives

Follow Installation instructions to use this package in your R session.