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TENxBUSData

This is the development version of TENxBUSData; for the stable release version, see TENxBUSData.

Single cell dataset from 10x in BUS format


Bioconductor version: Development (3.19)

Download Barcode, UMI, and Set (BUS) format of 10x datasets from within R. This package accompanies the package BUSpaRse, which can load BUS format into R as a sparse matrix, and which has utility functions related to using the C++ command line package bustools.

Author: Lambda Moses [aut, cre]

Maintainer: Lambda Moses <dlu2 at caltech.edu>

Citation (from within R, enter citation("TENxBUSData")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("TENxBUSData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TENxBUSData")
Downloading BUS data HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews ExperimentData, ExperimentHub, ExpressionData, SequencingData, SingleCellData
Version 1.17.0
License BSD_2_clause + file LICENSE
Depends
Imports ExperimentHub, AnnotationHub, utils, BiocGenerics
System Requirements
URL https://github.com/BUStools/TENxBUSData
Bug Reports https://github.com/BUStools/TENxBUSData/issues
See More
Suggests knitr, rmarkdown, BiocStyle
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me BUSpaRse
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package TENxBUSData_1.17.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/TENxBUSData
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/TENxBUSData
Package Short Url https://bioconductor.org/packages/TENxBUSData/
Package Downloads Report Download Stats