TENET.ExperimentHub

This is the development version of TENET.ExperimentHub; for the stable release version, see TENET.ExperimentHub.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21

Experiment data for the TENET package

Bioconductor version: Development (3.24)

ExperimentHub package containing datasets for use in the TENET package's vignette and function examples. These include a variety of different objects to illustrate different datasets used in TENET functions. Where applicable, all datasets are aligned to the hg38 human genome.

Author: Rhie Lab at the University of Southern California [cre], Daniel Mullen [aut] ORCID: 0000-0002-7639-0549 , Zexun Wu [aut] ORCID: 0000-0003-2566-1326 , Ethan Nelson-Moore [aut] ORCID: 0009-0001-6903-9232 , Suhn Rhie [aut] ORCID: 0000-0002-5522-5296

Maintainer: Rhie Lab at the University of Southern California <rhielab at gmail.com>

Citation (from within R, enter citation("TENET.ExperimentHub")):

Daniel Mullen, Zexun Wu, Ethan Nelson-Moore, Suhn Rhie. TENET.ExperimentHub: Experiment data for the TENET package. doi:10.18129/B9.bioc.TENET.ExperimentHub, R package version 1.5.0, https://bioconductor.org/packages/TENET.ExperimentHub.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("TENET.ExperimentHub")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TENET.ExperimentHub")

Using the TENET.ExperimentHub datasets	HTML	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	BreastCancerData, CancerData, CellCulture, ExperimentData, ExperimentHub, ExpressionData, Genome, Homo_sapiens_Data, MethylationArrayData, MicroarrayData, RNASeqData, Tissue
Version	1.5.0
In Bioconductor since	BioC 3.21 (R-4.5) (1.5 years)
License	GPL-2
Depends	R (>= 4.5), ggplot2 (>= 4.0)
Imports	ExperimentHub, SummarizedExperiment, MultiAssayExperiment, GenomicRanges, methods
System Requirements
URL	https://github.com/rhielab/TENET.ExperimentHub
Bug Reports	https://github.com/rhielab/TENET.ExperimentHub/issues

Suggests	TENET, ExperimentHubData, testthat (>= 3.0.0), BiocManager, knitr, rmarkdown, BiocStyle
Linking To
Enhances
Depends On Me
Imports Me	TENET
Suggests Me
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	TENET.ExperimentHub_1.5.0.tar.gz
Windows Binary (x86_64)
macOS Binary (big-sur-x86_64)
macOS Binary (sonoma-arm64)
Source Repository	git clone https://git.bioconductor.org/packages/TENET.ExperimentHub
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/TENET.ExperimentHub
Package Short Url	https://bioconductor.org/packages/TENET.ExperimentHub/
Package Downloads Report	Download Stats