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TCGAMethylation450k

This is the development version of TCGAMethylation450k; for the stable release version, see TCGAMethylation450k.

All versions 3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13, 2.12, 2.11, 2.10, 2.9

The Cancer Genome Atlas Illumina 450k methylation example data


Bioconductor version: Development (3.24)

The Cancer Genome Atlas (TCGA) is applying genomics technologies to over 20 different types of cancer. This package contains a small set of 450k array data in idat format.

Author: Sean Davis

Maintainer: Sean Davis <sdavis2 at mail.nih.gov>

Citation (from within R, enter citation("TCGAMethylation450k")):

Sean Davis. TCGAMethylation450k: The Cancer Genome Atlas Illumina 450k methylation example data. doi:10.18129/B9.bioc.TCGAMethylation450k, R package version 1.49.0, https://bioconductor.org/packages/TCGAMethylation450k.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("TCGAMethylation450k")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

No vignettes available
Reference ManualPDF

Details

biocViews CancerData, ExperimentData, Genome, MethylationArrayData
Version1.49.0
In Bioconductor sinceBioC 2.9 (R-2.14) (15 years)
License GPL-2
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Depends On Me
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Suggests Me methylumi
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Build Report Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package TCGAMethylation450k_1.49.0.tar.gz
Windows Binary (x86_64)
macOS Binary (big-sur-x86_64)
macOS Binary (sonoma-arm64)
Source Repositorygit clone https://git.bioconductor.org/packages/TCGAMethylation450k
Source Repository (Developer Access)git clone git@git.bioconductor.org:packages/TCGAMethylation450k
Package Short Url https://bioconductor.org/packages/TCGAMethylation450k/
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