Welcome to the new bioconductor.org!

SomaticCancerAlterations

This is the development version of SomaticCancerAlterations; for the stable release version, see SomaticCancerAlterations.

Somatic Cancer Alterations


Bioconductor version: Development (3.19)

Collection of somatic cancer alteration datasets

Author: Julian Gehring

Maintainer: Julian Gehring <jg-bioc at gmx.com>

Citation (from within R, enter citation("SomaticCancerAlterations")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("SomaticCancerAlterations")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SomaticCancerAlterations")
SomaticCancerAlterations - HTML HTML R Script
Reference Manual PDF

Details

biocViews CancerData, ExperimentData, Genome, NCI, Project1000genomes
Version 1.39.0
License GPL-3
Depends R (>= 3.5.0)
Imports GenomicRanges, IRanges, S4Vectors
System Requirements
URL
See More
Suggests testthat, ggbio, ggplot2, knitr
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me SomaticSignatures
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package SomaticCancerAlterations_1.39.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/SomaticCancerAlterations
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/SomaticCancerAlterations
Package Short Url https://bioconductor.org/packages/SomaticCancerAlterations/
Package Downloads Report Download Stats