Registration Open for Bioc2024
Early registration discount pricing ends May 31!

SFEData

This is the development version of SFEData; for the stable release version, see SFEData.

Example SpatialFeatureExperiment datasets


Bioconductor version: Development (3.20)

Example spatial transcriptomics datasets with Simple Feature annotations as SpatialFeatureExperiment objects. Technologies include Visium, slide-seq, Nanostring CoxMX, Vizgen MERFISH, and 10X Xenium. Tissues include mouse skeletal muscle, human melanoma metastasis, human lung, breast cancer, and mouse liver.

Author: Lambda Moses [aut, cre] , Alik Huseynov [aut] , Kayla Jackson [aut] , Lior Pachter [aut, ths]

Maintainer: Lambda Moses <dlu2 at caltech.edu>

Citation (from within R, enter citation("SFEData")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("SFEData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SFEData")
Example SpatialFeatureExperiment datasets HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews ExperimentData, ExperimentHub, ExpressionData, Homo_sapiens_Data, Mus_musculus_Data, SingleCellData, SpatialData, Tissue
Version 1.7.0
License Artistic-2.0
Depends
Imports BiocFileCache, AnnotationHub, ExperimentHub, utils
System Requirements
URL https://github.com/pachterlab/SFEData
Bug Reports https://github.com/pachterlab/SFEData/issues
See More
Suggests BiocStyle, knitr, rmarkdown, SeuratObject, SpatialFeatureExperiment, testthat (>= 3.0.0)
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me SpatialFeatureExperiment, Voyager
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package SFEData_1.7.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/SFEData
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/SFEData
Package Short Url https://bioconductor.org/packages/SFEData/
Package Downloads Report Download Stats