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MethylSeqData

This is the development version of MethylSeqData; for the stable release version, see MethylSeqData.

Collection of Public DNA Methylation Sequencing Datasets


Bioconductor version: Development (3.19)

Base-level (i.e. cytosine-level) counts for a collection of public bisulfite-seq datasets (e.g., WGBS and RRBS), provided as SummarizedExperiment objects with sample- and base-level metadata.

Author: Peter Hickey [aut, cre]

Maintainer: Peter Hickey <peter.hickey at gmail.com>

Citation (from within R, enter citation("MethylSeqData")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("MethylSeqData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MethylSeqData")
User's Guide HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews ExperimentData, ExperimentHub, Homo_sapiens_Data, MethylSeqData, Mus_musculus_Data, SequencingData
Version 1.13.0
License CC0
Depends SummarizedExperiment
Imports ExperimentHub, HDF5Array, rhdf5, GenomeInfoDb, S4Vectors, GenomicRanges, stats, IRanges, utils
System Requirements
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Suggests BiocFileCache, BiocStyle, data.table, knitr, rmarkdown
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MethylSeqData_1.13.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/MethylSeqData
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MethylSeqData
Package Short Url https://bioconductor.org/packages/MethylSeqData/
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