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MetaGxPancreas

This is the development version of MetaGxPancreas; for the stable release version, see MetaGxPancreas.

Transcriptomic Pancreatic Cancer Datasets


Bioconductor version: Development (3.20)

A collection of pancreatic Cancer transcriptomic datasets that are part of the MetaGxData package compendium. This package contains multiple pancreas cancer datasets that have been downloaded from various resources and turned into SummarizedExperiment objects. The details of how the authors normalized the data can be found in the experiment data section of the objects. Additionally, the location the data was obtained from can be found in the url variables of the experiment data portion of each SE.

Author: Michael Zon [aut], Vandana Sandhu [aut], Christopher Eeles [ctb], Benjamin Haibe-Kains [aut, cre]

Maintainer: Benjamin Haibe-Kains <benjamin.haibe.kains at utoronto.ca>

Citation (from within R, enter citation("MetaGxPancreas")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("MetaGxPancreas")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MetaGxPancreas")
MetaGxPancreas: A Package for Pancreatic Cancer Gene Expression Analysis HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews ArrayExpress, CancerData, ExperimentData, ExperimentHub, ExpressionData, GEO, Homo_sapiens_Data, MicroarrayData, NCI, SequencingData
Version 1.25.0
License Artistic-2.0
Depends SummarizedExperiment, ExperimentHub, R (>= 3.6.0)
Imports stats, impute, S4Vectors, AnnotationHub
System Requirements
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Suggests testthat, knitr, BiocStyle, rmarkdown, markdown
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MetaGxPancreas_1.25.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/MetaGxPancreas
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MetaGxPancreas
Package Short Url https://bioconductor.org/packages/MetaGxPancreas/
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