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LiebermanAidenHiC2009

This is the development version of LiebermanAidenHiC2009; for the stable release version, see LiebermanAidenHiC2009.

Selected data from the HiC paper of E. Lieberman-Aiden et al. in Science (2009)


Bioconductor version: Development (3.19)

This package provides data that were presented in the article "Comprehensive mapping of long-range interactions reveals folding principles of the human genome", Science 2009 Oct 9;326(5950):289-93. PMID: 19815776

Author: Wolfgang Huber, Felix Klein

Maintainer: Felix Klein <fklein at embl.de>

Citation (from within R, enter citation("LiebermanAidenHiC2009")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("LiebermanAidenHiC2009")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("LiebermanAidenHiC2009")
Exploration of HiC data PDF R Script
Reference Manual PDF

Details

biocViews ChIPSeqData, ChipOnChipData, DNASeqData, ENCODE, ExperimentData, GEO, Genome, NCI, SequencingData, SmallRNAData, miRNAData
Version 0.41.0
License LGPL
Depends KernSmooth, IRanges
Imports
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package LiebermanAidenHiC2009_0.41.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/LiebermanAidenHiC2009
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/LiebermanAidenHiC2009
Package Short Url https://bioconductor.org/packages/LiebermanAidenHiC2009/
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