HuMMANet

This is the development version of HuMMANet; to use it, please install the devel version of Bioconductor.

Curated Paired Human Microbiome-Metabolome Study Data

Bioconductor version: Development (3.24)

Provides access to curated paired human microbiome-metabolome study bundles available through Bioconductor ExperimentHub. The package organizes matched sample metadata, species abundance profiles, original and harmonized metabolite profiles, and study-specific annotation resources including metabolite identifier mappings, microbial producer annotations, disease associations, pathway annotations, and drug similarity matches. The resource is designed to support consistent and reproducible cross-study microbiome-metabolome analyses.

Author: Shivangi Verma [aut, fnd] ORCID: 0009-0006-8505-0032 , Nalin Arora [aut, cre] ORCID: 0009-0009-1340-688X , Himel Mallick [aut] ORCID: 0000-0003-4956-2429 , Tarini Shankar Ghosh [aut, fnd] ORCID: 0000-0001-9570-0365

Maintainer: Nalin Arora <naa4050 at med.cornell.edu>

Citation (from within R, enter citation("HuMMANet")):

Shivangi Verma, Nalin Arora, Himel Mallick, Tarini Shankar Ghosh. HuMMANet: Curated Paired Human Microbiome-Metabolome Study Data. doi:10.18129/B9.bioc.HuMMANet, R package version 0.99.3, https://bioconductor.org/packages/HuMMANet.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("HuMMANet")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

No vignettes available
Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	ExperimentData, ExperimentHub, Homo_sapiens_Data, MicrobiomeData
Version	0.99.3
In Bioconductor since	BioC 3.24 (R-4.6)
License	MIT + file LICENSE
Depends	R (>= 4.6.0)
Imports	ExperimentHub, MultiAssayExperiment, S4Vectors, SummarizedExperiment, stats, utils
System Requirements
URL	https://github.com/ShivangiV-IIITD/HuMMANet
Bug Reports	https://github.com/ShivangiV-IIITD/HuMMANet/issues

Suggests	BiocStyle, knitr, rmarkdown, testthat (>= 3.0.0)
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	HuMMANet_0.99.3.tar.gz
Windows Binary (x86_64)
macOS Binary (big-sur-x86_64)
macOS Binary (sonoma-arm64)
Source Repository	git clone https://git.bioconductor.org/packages/HuMMANet
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/HuMMANet
Package Short Url	https://bioconductor.org/packages/HuMMANet/
Package Downloads Report	Download Stats