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HiContactsData

This is the development version of HiContactsData; for the stable release version, see HiContactsData.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16

HiContacts companion data package

DOI: 10.18129/B9.bioc.HiContactsData

Bioconductor version: Development (3.24)

Provides a collection of Hi-C files (pairs, (m)cool and fastq). These datasets can be read into R and further investigated and visualized with the HiContacts package. Data includes yeast Hi-C data generated by the Koszul lab from the Pasteur Institute.

Author: Jacques Serizay [aut, cre]

Maintainer: Jacques Serizay <jacquesserizay at gmail.com>

Citation (from within R, enter citation("HiContactsData")):

Jacques Serizay. HiContactsData: HiContacts companion data package. doi:10.18129/B9.bioc.HiContactsData, R package version 1.15.0, https://bioconductor.org/packages/HiContactsData.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("HiContactsData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("HiContactsData")

Details

Package Archives

Follow Installation instructions to use this package in your R session.