HarmanData

This is the development version of HarmanData; for the stable release version, see HarmanData.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3

Data for the Harman package

Bioconductor version: Development (3.24)

Datasets of accompany Harman, a PCA and constrained optimisation based technique. Contains three example datasets: IMR90, Human lung fibroblast cells exposed to nitric oxide; NPM, an experiment to test skin penetration of metal oxide nanoparticles following topical application of sunscreens in non-pregnant mice; OLF; an experiment to gauge the response of human olfactory neurosphere-derived (hONS) cells to ZnO nanoparticles. Since version 1.24, this package also contains the Infinium5 dataset, a set of batch correction adjustments across 5 Illumina Infinium Methylation BeadChip datasets. This file does not contain methylation data, but summary statistics of 5 datasets after correction. There is also an EpiSCOPE_sample file as exampling for the new methylation clustering functionality in Harman.

Author: Yalchin Oytam [aut], Josh Bowden [aut], Jason Ross [aut, cre]

Maintainer: Jason Ross <jason.ross at csiro.au>

Citation (from within R, enter citation("HarmanData")):

Yalchin Oytam, Josh Bowden, Jason Ross. HarmanData: Data for the Harman package. doi:10.18129/B9.bioc.HarmanData, R package version 1.41.0, https://bioconductor.org/packages/HarmanData.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("HarmanData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("HarmanData")

HarmanData	HTML	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	ExperimentData, ExpressionData, Homo_sapiens_Data, MicroarrayData, Mus_musculus_Data
Version	1.41.0
In Bioconductor since	BioC 3.3 (R-3.3) (10.5 years)
License	GPL-3
Depends	R (>= 3.5.0)
Imports
System Requirements
URL	http://www.bioinformatics.csiro.au/harman/

Suggests	BiocGenerics, BiocStyle, knitr, rmarkdown, Harman (>= 1.23.3)
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me	Harman
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	HarmanData_1.41.0.tar.gz
Windows Binary (x86_64)
macOS Binary (big-sur-x86_64)
macOS Binary (sonoma-arm64)
Source Repository	git clone https://git.bioconductor.org/packages/HarmanData
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/HarmanData
Package Short Url	https://bioconductor.org/packages/HarmanData/
Package Downloads Report	Download Stats